PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g002900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 291aa    MW: 33060.7 Da    PI: 4.8438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g002900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-21101151256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+ge
  Csa11g002900.1 101 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDLAAYKLRGE 151
                     59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-34100158No hitNo description
PROSITE profilePS5103223.538101158IPR001471AP2/ERF domain
SMARTSM003806.4E-37101164IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-24101158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-32101159IPR001471AP2/ERF domain
PfamPF008475.7E-15102151IPR001471AP2/ERF domain
PRINTSPR003672.1E-11102113IPR001471AP2/ERF domain
PRINTSPR003672.1E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAAIDMFNSN TDLSDPFKEE LMKALQPFTN NTVSSSSFSS PCPYSNTIFG FNQTTPLGLN  60
QLTPYQIHQI QNQLNQRRNT IISPNLAPRP VPMKSMATQK LYRGVRQRHW GKWVAEIRLP  120
KNRTRLWLGT FDTAEEAAMA YDLAAYKLRG EFARLNFPQF RHEDGYYGGD SFFNPLHSSV  180
DAKLQAICQS LRKTEDDDHH RIHLPCSETE LFPPKTEYQE SDEYGFLRSV ENSFSDESQV  240
ESSSPESCVT TNTTFLDFSE SGFDEIGSFG LEKFPSVEID WDAISKLSES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2197158163ATERF1
3gcc_A1e-2197158163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226050.0AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project).
GenBankAL1615950.0AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91.
GenBankBT0257190.0BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437100.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-177ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLR0H6F00.0R0H6F0_9BRAS; Uncharacterized protein
STRINGAT4G39780.11e-175(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-145ERF family protein